TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323452602|gb|EGB08475.1| selenoprotein [Aureococcus
anophagefferens]
         (601 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...   291   6e-79
gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...   290   1e-78
gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    32   1.4  
gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   3.0  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   3.0  
gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   4.0  
gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   4.0  
gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   6.8  
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   8.9  

>gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun
              sequence
          Length = 764225

 Score =  291 bits (746), Expect = 6e-79
 Identities = 219/613 (35%), Positives = 295/613 (48%), Gaps = 62/613 (10%)
 Frame = +1

Query: 51     NTAARDVRGGHFVRPLALSPLGAPRLLAFSNATLALLGLDAAEAARPEFLAVFAGGDPRA 110
              N   R V  GH+V P+  + +  PRL+ +S    A L L   + A P+F+   +G     
Sbjct: 668602 NRTRRPVFNGHYV-PVKPTGIAKPRLVMYSPDMAAQLQLTPEQVASPDFVDWVSGNT--- 668769

Query: 111    PALAPLHAAPWATPYALSIYGSEQVTDG--GVGDGYGDGRAASLFVAGAWEAQLKGSGPT 168
                   +    WATPYALSI G+    +   G G+GYGDGRA S+      E QLKG G T
Sbjct: 668770 -----VLGETWATPYALSIMGTRYTNNCPYGTGNGYGDGRAISIGELHGLELQLKGGGTT 668934

Query: 169    PFRRRGDGFAVVRSSTREFLASEAMAALGVPTTRALALCASASDVAERPWYSDRTAVD-- 226
              PF R  DG AV+RSS REFLASEAM +L V TTRAL+L  S  D   RPWYSD + +   
Sbjct: 668935 PFHRGADGRAVLRSSIREFLASEAMHSLNVSTTRALSLVVSELDTISRPWYSDNSVLRIP 669114

Query: 227    --DDFQPVRHGGD------------------VLRRERRAITTRVARSFVRVGSLELFARR 266
                DD +  ++  +                  ++ RE+ AIT RVA SF+RVG L+LFARR
Sbjct: 669115 DMDDPRLAQYDTEERKRIIQQLKAQSKADPNIMVREKTAITCRVATSFLRVGHLDLFARR 669294

Query: 267    LRRTGE---------PRARRELEALFRYAYDREGLGPAGAALEDAAVAAAT------ETR 311
              + RT +             +ELE L  +A  RE    A     +    AA       +  
Sbjct: 669295 VERTSKNTDGTYDTSTLEWKELEDLVWHACYREYRHAAYEPFHETRDIAAAAHVLLKQAA 669474

Query: 312    GRFASLACHWLRVGYAQSNYNSDNSLVGGATVDYGPFGFVERYDKTWAMWVGSGDHFAFG 371
               R A++   W+RVG+ Q N+N+DN LVGG T+DYGPFGF+E Y  T A W GSG+HF F 
Sbjct: 669475 DRIAAMVADWVRVGFIQGNFNADNCLVGGRTMDYGPFGFLEYYHPTAAKWTGSGEHFGFL 669654

Query: 372    NALEAARRNWATLVDALRPLAGGRDAALDAAVRGWPAEARRAEGAMRAAKLGLVGAAALA 431
              N   A   N+  L +++ P+         AA  G P+         +  K  L  AA + 
Sbjct: 669655 NQPSAGFANFKVLAESVVPVI--------AAAHGEPSS--------KILKNVLDDAAKVF 669786

Query: 432    AATVDGAVRWDRVDAPRGAAALGLWARADALLSRGPPYADHTLFWRLLGRAAR------A 485
                 VD   R              +W   + LL       D TLF+R L    +      +
Sbjct: 669787 QNKVDETFRKKLGFTVEQDIGDDVWEALEPLLRLS--QIDWTLFFRQLTMLLKDFPDLSS 669960

Query: 486    ADGAAALGALGGA---------WYDAPDADLAAAWRAWLDDWR----ALGPDA----AAM 528
               D    L AL G+         +Y+     L A W  W++ WR    A G D       M
Sbjct: 669961 EDYVGMLCALEGSDTDREGSSPFYEPLTQQLRARWLTWIEQWRVALDACGSDTDTIFEQM 670140

Query: 529    DAANPAFVPREWMLVEAYEAAERGDGAVVDRLAALFRRPYAEDQAQADSEAYFRRAPDDA 588
                 NP FV REWMLV+AY  A  GD + + +L  L +RPY ++  + +   ++RRA ++A
Sbjct: 670141 RTTNPKFVLREWMLVDAYTRAAAGDESDMRKLFELIQRPY-DEGTKDEINRFYRRASEEA 670317

Query: 589    HLTGGVGWMSUSS 601
                TGG  +MS SS
Sbjct: 670318 LTTGGTAFMS*SS 670356


>gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome
             shotgun sequence
          Length = 690427

 Score =  290 bits (743), Expect = 1e-78
 Identities = 225/630 (35%), Positives = 290/630 (46%), Gaps = 79/630 (12%)
 Frame = +3

Query: 51    NTAARDVRGGHFVRPLALSPLGAP--RLLAFS-NATLALLGLDAAEAARPEFLAVFAGGD 107
             N  AR V  GH+V   A+ P G P  RLL +S +     L +   +    EFLA  +G  
Sbjct: 25944 NRTARPVYNGHYV---AVRPTGLPQPRLLLYSPDVAHRELTITPEQIESEEFLAWISGNQ 26114

Query: 108   PRAPALAPLHAAPWATPYALSIYGSEQVTDGG--VGDGYGDGRAASLFVAGAWEAQLKGS 165
                P         WATPYALSI G    ++     GDGYGDGRA S+      E QLKG+
Sbjct: 26115 VYGPT--------WATPYALSIMGERYTSNCPFRTGDGYGDGRAISIGEFWGQELQLKGA 26270

Query: 166   GPTPFRRRGDGFAVVRSSTREFLASEAMAALGVPTTRALALCASASDVAERPWY------ 219
             G TPF R GDG AV+RSS REFLASEAM ALGV TTRAL+L  S S+   RPWY      
Sbjct: 26271 GTTPFSRSGDGRAVLRSSVREFLASEAMYALGVDTTRALSLVISDSETISRPWYNQASSD 26450

Query: 220   ----------------SDRTAVDDDFQPVRH----GGDVLRRERRAITTRVARSFVRVGS 259
                             S  T   D  + VRH      ++L +E+ AIT RV+ SF+R+G 
Sbjct: 26451 RIDQSLPFTNDSSRQQSSETERQDSIERVRHQDKQDPNMLVQEKTAITCRVSMSFIRIGH 26630

Query: 260   LELFARR-------------LRRTGEPRARRELEALFRYA-------------YDREGLG 293
              +L+ARR             LR         ELE L  +              Y R  + 
Sbjct: 26631 FDLYARRSEKKSLENFEYTGLRFDTTTAEWHELEQLIWHTCFREFRTECYDPFYPRRNIA 26810

Query: 294   PAGAALEDAAVAAATETRGRFASLACHWLRVGYAQSNYNSDNSLVGGATVDYGPFGFVER 353
              A A L D A         + A++   W+RVG+AQ N+N+DN LV G TVDYGPFGFVE 
Sbjct: 26811 AAAALLLDLAAE-------KIATMVAGWIRVGFAQGNFNADNCLVAGRTVDYGPFGFVEE 26969

Query: 354   YDKTWAMWVGSGDHFAFGNALEAARRNWATLVDALRPLAGGRDAALDAAVRGWPAEARRA 413
             +D T++ W GSG HF F N   AA  N+  LV+++ P+                  A+  
Sbjct: 26970 FDPTFSKWTGSGTHFGFMNQPSAALANYKILVESVVPVIA----------------AQTM 27101

Query: 414   EGAMRAAKLGLVGAAALAAATVDGAVRWDRVDAPRGAAALGLWARADALLSRGPPYADHT 473
             E   R     L  A  L    V    R     +        LW     +L       D T
Sbjct: 27102 EDMERIRTSFLERAQILFEKAVSEVFRIKLGFSRDQKEGDRLWNSLQYMLRHS--RTDWT 27275

Query: 474   LFWRLLGRAARA---------------ADGAAALGALGGAWYDAPDADLAAAWRAWLDDW 518
             +F+R L    R+                +G        GA+YDA    +   W AWL++W
Sbjct: 27276 IFFRQLSYITRSLSQDAGRNYTEMMTMLEGGQQTSWGQGAFYDALTPSIRQQWIAWLEEW 27455

Query: 519   -RALGPDAAAMDA------ANPAFVPREWMLVEAYEAAERGDGAVVDRLAALFRRPYAED 571
               AL  +  + DA       NP FV REWMLV+AY +AE G+ A +  L  L + PY+E 
Sbjct: 27456 SSALSANRMSSDAFEQMISVNPKFVLREWMLVKAYRSAEIGEDAELFYLHDLIQAPYSEG 27635

Query: 572   QAQADSEAYFRRAPDDAHLTGGVGWMSUSS 601
               Q  ++ Y+RRA + A   GG  +MS SS
Sbjct: 27636 SPQQQTQ-YYRRASEHALTAGGTAFMS*SS 27722


>gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun
              sequence
          Length = 901853

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 198    VPTTRALALCASASDVAERPWYSDRTAVDDDFQPVRHGGDVLRRERRAITTRVA--RSFV 255
              V TT AL    +++ VA   + S  T   D+FQPV    D   R  ++ TT V    +FV
Sbjct: 869962 VATTTALVPFEASAQVAGNKFISQGTMNPDNFQPVCPASDGFYRVLQSTTTAVVGEENFV 869783

Query: 256    RVGSL 260
                G L
Sbjct: 869782 EYGPL 869768


>gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 30, whole genome
             shotgun sequence
          Length = 317207

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = -1

Query: 140   VGDGYGDGRAASLFVAGAWEA---QLKG----SGPTPFRRRGDGFAVVRSSTR 185
             V DGY   +  S FVAG W+    Q+ G     G    RRRG+GF+V+R   R
Sbjct: 71153 VEDGYDRFQRCS-FVAGGWDPWTFQIHGRCRVGG*RRRRRRGEGFSVLREGFR 70998


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -1

Query: 5       ILLAAAARGARSSDDAGEDLEELAARVTDDFAAALDVDPDAAANAPNTAARD 56
               +  AAAA  A  +D     + + AA   +  AAA+DVD  AAANA   A  +
Sbjct: 2312725 VAAAAAAAAAADTDPTSALIAKAAAAAVE--AAAVDVDVTAAANAAALAVHE 2312576



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 394     GRDAALDAAVRGWPAEARRAEGAMRAAKLGLVGAAALAAATVDGAVRWDR 443
               GRDA + +   G          ++ A+  G VGA+  A A+VDGA  W+R
Sbjct: 1456763 GRDAGVSSTGTGCAL-------SLSASGTGSVGASGRAGASVDGAFFWNR 1456891



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 269   RTGEPRARRELEALFRYAYDREGLGPAGAALEDAAVAAAT-ETRGRFASLACHWLR 323
             R G  R +R +   FR++  R+G+G      +D  V     E+RGR+ S  C W R
Sbjct: 44370 RCGRLRKKRGIRKRFRWS-SRDGVG-----CDDRGVVRVE*ESRGRWGSKECRWCR 44519


>gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun
              sequence
          Length = 1002813

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 27/67 (40%), Positives = 32/67 (47%)
 Frame = -3

Query: 392    AGGRDAALDAAVRGWPAEARRAEGAMRAAKLGLVGAAALAAATVDGAVRWDRVDAPRGAA 451
              AG R +AL  A+ G  AEA  A G  RA    +   AA AA     +V+  RVD  R A 
Sbjct: 804406 AGSRPSALGKAMTG--AEAWAACGTHRALPSVVPTKAAAAAVVTRRSVKRWRVDGIRDAC 804233

Query: 452    ALGLWAR 458
                G W R
Sbjct: 804232 --GWWRR 804218


>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
              sequence
          Length = 1007773

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
 Frame = -1

Query: 36     AAALDVDPDAAANAPNTAARDVRGGHFVRPLALSPL--------GAPRLLAFSNATLALL 87
              A+A+ V+P + A    T    + GG+ + P   S L        G PR+L  +   LA  
Sbjct: 282481 ASAVTVNPKSLAYELTTTPIGIPGGNGMNPCMASTLRPAM*TGWGGPRVLVTTQLELA-- 282308

Query: 88     GLDAAEAARPEFLAVFAGGDPRAPALAPLHAAPWATPYA 126
               LDAA AA      V   G  R   L+ L A+ W T  A
Sbjct: 282307 -LDAANAA-----DVQVEGSTREAVLSTL-ASRWLTSAA 282212


>gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun
              sequence
          Length = 1035082

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 161    QLKGSGPTPFRRRGDGFAVVRS--STREFLASEAMAALGVPTTR 202
              QL G G T   RRGDG+  +RS  + R F   E    L    TR
Sbjct: 862384 QLSGQGKTASYRRGDGYESIRSGGAVRRFALVEGRGGLVRIATR 862515


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
              sequence
          Length = 1360148

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +2

Query: 32     TDDF----AAALDVDPDAAANAPNTAARDVRGGHFVRPLALSPLGAPRLLAFSNATLALL 87
              TD F    A ++   PD   N  +T    VR    VRP+++S +  P  +   +AT+A  
Sbjct: 624797 TDSFVDVPALSVSYVPDQVPNVLDTVRVPVRRP-LVRPVSVSVVVDP--VPIVDATVAP- 624964

Query: 88     GLDAAEAARPEFLAVFAGGDPRAPALAPLHAAPWATPYALSIYGSEQVTDGGVGDGYG 145
               LDAA      F  +      R+P  A L      TP  + + G   +T   VG G+G
Sbjct: 624965 ALDAASVPDRRFGTLAFVDVTRSPPYATLAVPVSVTPSTVVLDGRVVITIIVVGVGFG 625138


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,514,129
Number of Sequences: 31
Number of extensions: 288012
Number of successful extensions: 1540
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 373
length of query: 601
length of database: 7,911,228
effective HSP length: 104
effective length of query: 497
effective length of database: 7,908,004
effective search space: 3930277988
effective search space used: 3930277988
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)